Difference between revisions of "Pharmacotyper"
Farmakorakel (talk | contribs) (→Pharmacotyper - getting relevant PGx variants from a patient VCF) |
Farmakorakel (talk | contribs) (→Pharmacotyper - getting relevant PGx variants from a patient VCF) |
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==Pharmacotyper - getting relevant PGx variants from a patient VCF== | ==Pharmacotyper - getting relevant PGx variants from a patient VCF== | ||
| − | The Pharmacotyper is a Python script that extracts relevant variants from a VCF returns | + | The Pharmacotyper is a Python script that extracts relevant variants from a VCF and returns |
;allele matching | ;allele matching | ||
: Match variants to PGx alleles by custom method. Return list of possible PGx alleles in the nomenclature of the OWL ontology of [[Pharmacoracle]] | : Match variants to PGx alleles by custom method. Return list of possible PGx alleles in the nomenclature of the OWL ontology of [[Pharmacoracle]] | ||
;haplotype queries | ;haplotype queries | ||
| − | : Return [[Pharmacoracle]] | + | : Return variants in terms of queries to [[Pharmacoracle]] |
We have coined the verb ''to pharmacotype'' for the action of the Pharmacotyper. | We have coined the verb ''to pharmacotype'' for the action of the Pharmacotyper. | ||
Revision as of 15:24, 13 July 2018
Pharmacotyper - getting relevant PGx variants from a patient VCF
The Pharmacotyper is a Python script that extracts relevant variants from a VCF and returns
- allele matching
- Match variants to PGx alleles by custom method. Return list of possible PGx alleles in the nomenclature of the OWL ontology of Pharmacoracle
- haplotype queries
- Return variants in terms of queries to Pharmacoracle
We have coined the verb to pharmacotype for the action of the Pharmacotyper.
