Difference between revisions of "Pharmacoracle"
Farmakorakel (talk | contribs) (→Pharmacoracle a REST API based on the OWLAPI) |
Farmakorakel (talk | contribs) (→Pharmacoracle - a REST API based on the OWLAPI) |
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| − | == | + | ==Pharmacoracle - a REST API based on the OWLAPI== |
| − | The | + | The Pharmacoracle contains OWL ontologies that are based on CPIC recommendations provided by PharmGKB, and which have been further curated to fit the needs of the Department of Pharmacology at Oslo University Hospital. |
| − | Queries to | + | Queries to Pharmacoracle can be performed in the Manchester syntax. |
===Examples of use=== | ===Examples of use=== | ||
| + | Find the PGx alleles that contain the variant snpC>T at chr6:18139228 | ||
| + | <pre>curl https://www.pgx.no/api/pharmacoracle -d "drugs=haplotypes&query=SubClasses:snpCtoT_at some chr6_18139228"</pre> | ||
| + | |||
Find the Azathioprine TPMT functional status of the TPMT*3B allele: | Find the Azathioprine TPMT functional status of the TPMT*3B allele: | ||
<pre>curl https://www.pgx.no/api/pharmacoracle -d "drugs=azathioprine&query=SuperClasses:has_haplotype some TPMTstar3B"</pre> | <pre>curl https://www.pgx.no/api/pharmacoracle -d "drugs=azathioprine&query=SuperClasses:has_haplotype some TPMTstar3B"</pre> | ||
Revision as of 13:32, 13 July 2018
Pharmacoracle - a REST API based on the OWLAPI
The Pharmacoracle contains OWL ontologies that are based on CPIC recommendations provided by PharmGKB, and which have been further curated to fit the needs of the Department of Pharmacology at Oslo University Hospital.
Queries to Pharmacoracle can be performed in the Manchester syntax.
Examples of use
Find the PGx alleles that contain the variant snpC>T at chr6:18139228
curl https://www.pgx.no/api/pharmacoracle -d "drugs=haplotypes&query=SubClasses:snpCtoT_at some chr6_18139228"
Find the Azathioprine TPMT functional status of the TPMT*3B allele:
curl https://www.pgx.no/api/pharmacoracle -d "drugs=azathioprine&query=SuperClasses:has_haplotype some TPMTstar3B"
