Pharmacotyper

Pharmacotyper - PGx genotyping in terms of star alleles

The Pharmacotyper is a collection of tools for genotyping of PGx alleles

Pharmacotyper latest version

The current version of Pharmacotyper is based on published tools in a Singularity container.

1. HLA typing

• • xHLA
  • Aldy

Pharmacotyper legacy version

The first version of the Pharmacotype was based on custom methods, inspired by PharmCAT.

1. allele matching

• • Match variants to PGx alleles by custom method. Return list of possible PGx alleles in the nomenclature of the OWL ontology of Pharmacoracle

1. haplotype queries

• • Return variants in terms of queries to Pharmacoracle

We have coined the verb to pharmacotype for the action of the Pharmacotyper.