Open main menu

Farmakorakels Wiki β

Changes

Pharmacoracle

2 bytes removed, 10:13, 27 February 2019
no edit summary
===Hints on how to use Pharmacoracle (version 1)===
In order to write queries to an OWL ontology we need to know the names of the OWL elements, notably OWL Properties (e.g. has_haplotype) and and OWL Classes (e.g. TPMTstar3A). <ref>The Oslo University Hospital PGx OWL ontology that is used by the Pharmacoracle is still work in progress, but it is possible to have a closer, off-line look at the latest OWL version of the [https://www.pgx.no/farmakorakel/haplotypes.owl GRCh37 star allele definitions], which is best studied in [https://protegewiki.stanford.edu/wiki/Protege4UserDocs Stanford's Desktop Protégé]. For an introduction to PGx OWL ontology curation, have a look at our tutorial for [[WebProtege]]</ref>.
In addition we need to know the Manchester expressions of cardinality that are used to connect OWL Properties and OWL Classes, in particular: