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Pharmacotyper

55 bytes added, 10:25, 27 February 2019
→‎Pharmacotyper - PGx genotyping in terms of star alleles
The current version of Pharmacotyper is based on published tools in a Singularity container.
# ; HLA typing** : For HLA typing we use [https://github.com/humanlongevity/HLA xHLA]** ; ADME typing: For other genes we use [https://github.com/inumanag/aldy Aldy]
===Pharmacotyper legacy version===
The first version of the Pharmacotype was based on custom methods, inspired by PharmCAT.
# ; allele matching** : Match variants to PGx alleles by custom method. Return list of possible PGx alleles in the nomenclature of the OWL ontology of [[Pharmacoracle]]# ; haplotype queries** : Return variants in terms of queries to [[Pharmacoracle]]
We have coined the verb ''to pharmacotype'' for the action of the Pharmacotyper.
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