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Allele definition

187 bytes added, 09:37, 27 February 2019
Which definition should we stick to?
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| PharmCAT method || One PGx allele per patient || Less compatible with previous SNP array methods. Some patients are no longer assigned to a known PGx allele
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| Aldy method || One PGx allele per patient, detection of new variants || [https://github.com/inumanag/aldy-paper-resources Test data sets for Aldy] shows that the method performs well, also with respect to targeted methods
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For now, due to the availability good performance and documentation of [https://github.com/inumanag/aldy-paper-resources test data sets for Aldy], we chose to rely on Aldy this is our preferred method for genotyping.