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This tutorial gives an introduction to using [https://www.pgx.no/webprotege WebProtégé ] for curating PGx recommendations.
Protégé is developed by Stanford University. And general-puropose tutorials (for the Desktop Protégé and WebProtégé) can be found at the [https://protegewiki.stanford.edu/wiki/Main_Page Stanford Protégé Wiki]. The best Protégé tool for quality assurance of PGx guideline semantics is the desktop version of Protégé, which is a visual front-end to the OWLAPI (which we use for distribution of PGx guidelines through the [[Pharmacoracle]]). However, for collaborative curation of OWLs it is better to use the WebProtégé. We [https://www.pgx.no/webprotege host our own copy of WebProtégé].
==User interface of Pharmacoracle's WebProtégé==
==Using Desktop Protégé for curation of PGx recommendations==
Collaborative curation of PGx recommendations can quite easily be performed in WebProtégé, as explained above (of course, as with any tool, curators have to get used to it).
However, for quality assurance of PGx guideline semantics, we still need to use the desktop version of Protégé<ref>Support for semantic reasoning may be introduced in WebProtege at a later stage</ref>.
[[File:Protege compare guideline structure.png|thumb|By running the reasoner in the Desktop Protégé, we can ensure that the OUS guidelines and the CPIC guidelines are sematnically equivalent]]