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→Pharmacotyper - getting relevant PGx variants from a patient VCF
==Pharmacotyper - getting relevant PGx variants from genotyping in terms of star alleles==The Pharmacotyper is a patient VCFcollection of tools for genotyping of PGx alleles ===Pharmacotyper latest version===The current version of Pharmacotyper is based on published tools in a Python script that extracts relevant variants from a VCF and returnsSingularity container.;HLA typing: [https://github.com/humanlongevity/HLA xHLA]: [https://github.com/inumanag/aldy Aldy] ===Pharmacotyper legacy version===The first version of the Pharmacotype was based on custom methods, inspired by PharmCAT.
;allele matching
: Match variants to PGx alleles by custom method. Return list of possible PGx alleles in the nomenclature of the OWL ontology of [[Pharmacoracle]]
