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Created page with "==Outline== * Integrate pharmacogenomic variant calling in the hospital bioinformatic workflow using [https://www.nextflow.io/ Nextflow] * Packaging the pharmacogenomic varian..."
==Outline==
* Integrate pharmacogenomic variant calling in the hospital bioinformatic workflow using [https://www.nextflow.io/ Nextflow]
* Packaging the pharmacogenomic variant callers in a [https://www.sylabs.io/docs/ Singularity container] for increased portability
** Using [https://github.com/inumanag/aldy Aldy] for genotyping of genes for absorption, distribution, metabolism, and excretion (ADME).
** Using [https://github.com/humanlongevity/HLA xHLA] for genotyping of the HLA-gene.
* Making test for continuous integration of pharmacogenomic variant calling in the pipeline
** Verified test data sets for Aldy are [https://github.com/inumanag/aldy-paper-resources publicly available]
* Integrate pharmacogenomic variant calling in the hospital bioinformatic workflow using [https://www.nextflow.io/ Nextflow]
* Packaging the pharmacogenomic variant callers in a [https://www.sylabs.io/docs/ Singularity container] for increased portability
** Using [https://github.com/inumanag/aldy Aldy] for genotyping of genes for absorption, distribution, metabolism, and excretion (ADME).
** Using [https://github.com/humanlongevity/HLA xHLA] for genotyping of the HLA-gene.
* Making test for continuous integration of pharmacogenomic variant calling in the pipeline
** Verified test data sets for Aldy are [https://github.com/inumanag/aldy-paper-resources publicly available]
