296
edits
Changes
→Outline
==Outline==
* Integrate pharmacogenomic variant calling in the hospital bioinformatic workflow using [https://www.nextflow.io/ Nextflow]
* Packaging the pharmacogenomic variant callers in a [https://www.sylabs.io/docs/ Singularity container] for increased portability(the [[Pharmacotyper]])
** Using [https://github.com/inumanag/aldy Aldy] for genotyping of genes for absorption, distribution, metabolism, and excretion (ADME).
** Using [https://github.com/humanlongevity/HLA xHLA] for genotyping of the HLA-gene.
* Making test for continuous integration of pharmacogenomic variant calling in the pipeline
** Verified test data sets for Aldy are [https://github.com/inumanag/aldy-paper-resources publicly available]
