User contributions
27 February 2019
Pharmacotyper
Pharmacotyper latest version
+139
Pharmacotyper
Pharmacotyper latest version
+23
Pharmacotyper
Pharmacotyper legacy version
+33
Pharmacoracle
Hints on how to use Pharmacoracle (version 1)
-4
Gene function
Description of problem
+332
File:Cyp2d6 outline.png
The gene CYP2D6 is important for metabolization of several drugs. It is characterized by repeated regions, copy number variation and pseudogenes. In this figure we see how CYP2D6 and the two pseudogenes CYP2D7 and CYP2D8 are outlined. This is a visuali...
Gene function
Description of problem
+248
Gene function
Genetic regions
+7
Gene function
Genetic regions
+100
File:Gene outline.png
The effect of a variant depends on the region where it is located
Gene function
no edit summary
+200
Gene function
no edit summary
+254
Main Page
Sub-tasks for PGx at Oslo University Hospital
+129
WebProtege
no edit summary
-195
Bioinformatic pipeline
Outline
+24
Main Page
Sub-tasks for PGx at Oslo University Hospital
+44
Pharmacotyper
Pharmacotyper latest version
+60
Pharmacotyper
Pharmacotyper - PGx genotyping in terms of star alleles
+55
Pharmacotyper
Pharmacotyper - PGx genotyping in terms of star alleles
+8
Pharmacotyper
Pharmacotyper - getting relevant PGx variants from a patient VCF
+327
Pharmacoracle
no edit summary
-2
Pharmacoracle
Pharmacoracle - a REST API based on the OWLAPI
-462
Bioinformatic pipeline
Created page with "==Outline== * Integrate pharmacogenomic variant calling in the hospital bioinformatic workflow using [https://www.nextflow.io/ Nextflow] * Packaging the pharmacogenomic varian..."
Main Page
Sub-tasks for PGx at Oslo University Hospital
+63
Allele definition
Which definition should we stick to?
+187
Allele definition
How to define PGx alleles for next generation sequencing
+320
Allele definition
Chosing the correct variants to include in the PGx alleles
+407
Allele definition
Chosing an appropriate genomic reference build
-26
Allele definition
How to obtain PGx allele definitions from literature
+388
Main Page
Sub-tasks for PGx at Oslo University Hospital
+116
NGS
Challenges
+256
16 November 2018
2 November 2018
9 October 2018
8 October 2018
21 September 2018
WebProtege
no edit summary
+90
WebProtege
no edit summary
+10
WebProtege
no edit summary
+711
File:WebProtege download owl ontology.png
no edit summary
WebProtege
no edit summary
+9
WebProtege
User interface of Pharmacoracle's WebProtégé
+19
WebProtege
Try the Pharmacoracle WebProtégé yourself
+9
WebProtege
no edit summary
+241
WebProtege
Curation of the Recommendation
-51
WebProtege
Curation of the Recommendation
+63
WebProtege
no edit summary
-2
20 September 2018
Pharmacoracle
Hints on how to use it (see also example section below)
+98
WebProtege
no edit summary
+93